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Genetic characteristics of non-familial epilepsy

  • 주제(키워드) Non-familial epilepsy , Genetics , Whole exome sequencing , in silico analysis
  • 주제(기타) Multidisciplinary Sciences
  • 설명문(일반) [Kang, Kyung Wook; Kim, Myeong-Kyu] Chonnam Natl Univ, Med Sch, Dept Neurol, Gwangju, South Korea; [Kim, Wonkuk] Chung Ang Univ, Dept Appl Stat, Seoul, South Korea; [Cho, Yong Won; Kim, Keuntae] Keimyung Univ, Dept Neurol, Dongsan Med Ctr, Daegu, South Korea; [Lee, Sang Kun; Jung, Ki-Young] Seoul Natl Univ Hosp, Dept Neurol, Seoul, South Korea; [Shin, Wonchul] Kyung Hee Univ Hosp Gangdong, Dept Neurol, Seoul, South Korea; [Kim, Dong Wook] Kon Univ, Dept Neurol, Sch Med, Seoul, South Korea; [Kim, Won-Joo] Yonsei Univ, Coll Med, Dept Neurol, Gangnam Severance Hosp, Seoul, South Korea; [Lee, Hyang Woon] Ewha Womans Univ, Sch Med, Dept Neurol, Seoul, South Korea; [Lee, Hyang Woon] Ewha Med Res Inst, Seoul, South Korea; [Kim, Woojun] Catholic Univ Korea, Dept Neurol, Seoul St Marys Hosp, Coll Med, Seoul, South Korea; [Lee, So-Hyun; Choi, Seok-Yong] Natl Univ, Med Sch, Dept Biomed Sci, Gwangju, South Korea
  • 등재 SCIE, SCOPUS
  • OA유형 Green Published, gold, Green Submitted
  • 발행기관 PEERJ INC
  • 발행년도 2019
  • 총서유형 Journal
  • URI http://www.dcollection.net/handler/ewha/000000165964
  • 본문언어 영어
  • Published As http://dx.doi.org/10.7717/peerj.8278
  • PubMed https://pubmed.ncbi.nlm.nih.gov/31875159

초록/요약

Background: Knowledge of the genetic etiology of epilepsy can provide essential prognostic information and influence decisions regarding treatment and management, leading us into the era of precision medicine. However, the genetic basis underlying epileptogenesis or epilepsy pharmacoresistance is not well-understood, particularly in non-familial epilepsies with heterogeneous phenotypes that last until or start in adulthood. Methods: We sought to determine the contribution of known epilepsy-associated genes (EAGs) to the causation of non-familial epilepsies with heterogeneous phenotypes and to the genetic basis underlying epilepsy pharmacoresistance. We performed a multi-center study for whole exome sequencing-based screening of 178 selected EAGs in 243 non-familial adult patients with primarily focal epilepsy (122 drug-resistant and 121 drug-responsive epilepsies). The pathogenicity of each variant was assessed through a customized stringent filtering process and classified according to the American College of Medical Genetics and Genomics guidelines. Results: Possible causal genetic variants of epilepsy were uncovered in 13.2% of non-familial patients with primarily focal epilepsy. The diagnostic yield according to the seizure onset age was 25% (2/8) in the neonatal and infantile period, 11.1% (14/126) in childhood and 14.7% (16/109) in adulthood. The higher diagnostic yields were from ion channel-related genes and mTOR pathway-related genes, which does not significantly differ from the results of previous studies on familial or early-onset epilepsies. These potentially pathogenic variants, which were identified in genes that have been mainly associated with early-onset epilepsies with severe phenotypes, were also linked to epilepsies that start in or last until adulthood in this study. This finding suggested the presence of one or more disease-modifying factors that regulate the onset time or severity of epileptogenesis. The target hypothesis of epilepsy pharmacoresistance was not verified in our study. Instead, neurodevelopment-associated epilepsy genes, such as TSC2 or RELN, or structural brain lesions were more strongly associated with epilepsy pharmacoresistance. Conclusions: We revealed a fraction of possible causal genetic variants of non-familial epilepsies in which genetic testing is usually overlooked. In this study, we highlight the importance of earlier identification of the genetic etiology of non-familial epilepsies, which leads us to the best treatment options in terms of precision medicine and to future neurobiological research for novel drug development. This should be considered a justification for physicians determining the hidden genetics of non-familial epilepsies that last until or start in adulthood.

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