Complete mitochondrial genome of the ghost crab Ocypode stimpsoni Ortmann, 1897 (Brachyura: Decapoda: Ocypodidae) and its phylogenetic relationship in Brachyura
- 주제(키워드) Brachyura , Ocypode stimpsoni , mitochondrial genome , phylogenetic analysis
- 주제(기타) Genetics & Heredity
- 설명문(일반) [Kim, Hanul; Jung, Jongwoo] Ewha Womans Univ, Interdisciplinary Program Ecocreat, Seoul, South Korea; [Jung, Jongwoo] Ewha Womans Univ, Dept Sci Educ, Seoul 03760, South Korea
- 등재 SCIE, SCOPUS
- OA유형 gold
- 발행기관 TAYLOR & FRANCIS LTD
- 발행년도 2020
- 총서유형 Journal
- URI http://www.dcollection.net/handler/ewha/000000168635
- 본문언어 영어
- Published As https://dx.doi.org/10.1080/23802359.2020.1749160
초록/요약
In this paper, we analyzed the complete mitochondrial genome sequence of Ocypode stimpsoni. Whole-genome sequencing was performed using the MGISEQ-2000 platform. The length of the complete mitochondrial genome was 15,557 bp, and data were submitted to NCBI (MN917464). The genome consisted of 67.8% A + T bias, it included 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes, and a putative control region. The phylogenetic tree was constructed based on sequences of 13 PCGs identified by the maximum likelihood (ML) method. Collectively, the results support the original taxonomy assigned, O. stimpsoni belongs to Ocypodidae, Ocypodoidea. In addition, species in Ocypodoidea and Grapsoidea have a reciprocal paraphyly relationship, as demonstrated in previous studies.
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